Re: [galaxy-dev] Sam-to-Bam error

2012-11-19 Thread Nate Coraor
On Nov 19, 2012, at 8:01 AM, Nicholas Tucker wrote: > Dear all, > I have mapped some Illumina reads to a reference using Bowtie. > I am trying to use Sam Tools to convert Sam to Bam on our local galaxy, but > it always fails: > > > Traceback (most recent call last): > File "/export/galaxy/gala

[galaxy-dev] Sam-to-Bam error

2012-11-19 Thread Nicholas Tucker
Dear all, I have mapped some Illumina reads to a reference using Bowtie. I am trying to use Sam Tools to convert Sam to Bam on our local galaxy, but it always fails: Traceback (most recent call last): File "/export/galaxy/galaxy-central/lib/galaxy/jobs/runners/local.py", line 155, in run_job