Re: [galaxy-dev] Same error in multiple tools

2012-04-09 Thread Nate Coraor
On Mar 30, 2012, at 5:53 AM, Alban Lermine wrote: > Hi, > > It seems that PYTHONPATH isn't set when galaxy start.. (according to > http://osdir.com/ml/galaxy-development-source-control/2011-11/msg00035.html) > Should I search this way ? Hi Alban, Galaxy should be setting PYTHONPATH itself, it's

Re: [galaxy-dev] Same error in multiple tools

2012-03-30 Thread Alban Lermine
Hi, It seems that PYTHONPATH isn't set when galaxy start.. (according to http://osdir.com/ml/galaxy-development-source-control/2011-11/msg00035.html) Should I search this way ? Thanks by advance, Alban Alban Lermine wrote: > Hi, > > I'm running these tools on a cluster.. > > > Alban > > Emil

Re: [galaxy-dev] Same error in multiple tools

2012-03-28 Thread Alban Lermine
Hi, I'm running these tools on a cluster.. Alban Emil Bouvier wrote: > Alban, > > Are you running these tools on a cluster, or on a local system? > >Dave B. > > On 3/19/12 6:55 AM, Alban Lermine wrote: >> Hi, >> >> I have the same error message for multiple tools (GFFtoBED, >> BEDtoBIGBED,

Re: [galaxy-dev] Same error in multiple tools

2012-03-28 Thread Emil Bouvier
Alban, Are you running these tools on a cluster, or on a local system? Dave B. On 3/19/12 6:55 AM, Alban Lermine wrote: Hi, I have the same error message for multiple tools (GFFtoBED, BEDtoBIGBED,BAMtoSAM,...): /from galaxy import eggs ImportError: No module named galaxy It's happening o

[galaxy-dev] Same error in multiple tools

2012-03-19 Thread Alban Lermine
Hi, I have the same error message for multiple tools (GFFtoBED, BEDtoBIGBED,BAMtoSAM,...): /from galaxy import eggs ImportError: No module named galaxy It's happening only since the last upgrade, do you know what is going wrong? Thanks, Alban / -- Alban Lermine Unité 900 : Inserm - Mines Pa