Re: [galaxy-dev] Selecting Intermediary Files in a Workflow

2013-01-28 Thread James Taylor
You can work around this using the from_work_dir attribute when specifying the output file in your tool config. -- jt (composed on my phone) On Jan 27, 2013, at 6:13 PM, Peter Cock wrote: > On Sun, Jan 27, 2013 at 10:26 PM, Kolby Chien wrote: >> Hello, >> >> I've been working with a local

Re: [galaxy-dev] Selecting Intermediary Files in a Workflow

2013-01-27 Thread Peter Cock
On Sun, Jan 27, 2013 at 10:26 PM, Kolby Chien wrote: > Hello, > > I've been working with a local installation of Galaxy and my question is > about how Galaxy chooses which file to use in the next step of the workflow. > > I have created a custom file type called "cub" which is required for my > cu

[galaxy-dev] Selecting Intermediary Files in a Workflow

2013-01-27 Thread Kolby Chien
Hello, I've been working with a local installation of Galaxy and my question is about how Galaxy chooses which file to use in the next step of the workflow. I have created a custom file type called "cub" which is required for my custom tools and I have added this custom file type into the extensi