Re: [galaxy-dev] So I think I fixed a bug.

2012-08-23 Thread James
Hi All my bad, Error in email. the fix was else: sniff.convert_newlines( dp ) shutil.move( dp, os.path.join( files_path, name ) ) +# My fix jboocock # +os.chmod(files_path +"/" + n

Re: [galaxy-dev] So I think I fixed a bug.

2012-08-23 Thread James
Hi All, diff -r ba56d4746f7a tools/data_source/upload.py --- a/tools/data_source/upload.pyFri Aug 03 13:31:48 2012 -0400 +++ b/tools/data_source/upload.pyFri Aug 24 01:26:36 2012 +1200 @@ -357,6 +357,7 @@ else: sniff.convert_newlines(

Re: [galaxy-dev] So I think I fixed a bug.

2012-08-23 Thread Jeremy Goecks
For a simple patch like yours, just pasting and sending your diff to the list works well: %hg diff ... For bigger patches/enhancements, a bitbucket fork + pull request is highly encouraged. Best, J. On Aug 23, 2012, at 4:47 AM, James wrote: > Hi All, > > Today I found a bug relating

[galaxy-dev] So I think I fixed a bug.

2012-08-23 Thread James
Hi All, Today I found a bug relating to the file permissions in composite datatypes. When the extrafiles directory was created and the server was running through apache, the permission did not allow a galaxy user to download by following the HTML link. Found it was related to meta data files n