On Feb 1, 2012, at 9:45 AM, Lucilla Luzi wrote:
Thank you Nate,
maybe there is something that I'm still missing...
When I type what you suggest, I get again an error message that is
$ python scripts/fetch_eggs.py
Traceback (most recent call last):
File scripts/fetch_eggs.py, line 30, in module
c.resolve() # Only fetch eggs required by the config
File
/Users/lluzi/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 345, in resolve
egg.resolve()
File
/Users/lluzi/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 195, in resolve
return self.version_conflict( e.args[0], e.args[1] )
File
/Users/lluzi/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 226, in version_conflict
r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env,
egg.fetch )
File
/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py,
line 518, in resolve
raise DistributionNotFound(req) # XXX put more info here
pkg_resources.DistributionNotFound: numpy==1.6.0
Do I correctly understand your suggestion?
Should I manually download all the eggs from your site? If yes, do I need of
all of them?
Any other idea to overcome the problem?
It looks like you have a conflicting version of numpy already installed on the
system and Galaxy's conflict resolution code isn't handling this situation.
You may be able to fetch all the eggs with:
% python -ES ./scripts/fetch_eggs.py
If this works and running Galaxy still fails, you may need to set up a
virtualenv as described here:
http://usegalaxy.org/production
Sorry for the inconvenience.
--nate
Thanks again!
Lu
On 1/30/12 20:37 , Nate Coraor wrote:
On Jan 30, 2012, at 1:46 PM, Lucilla Luzi wrote:
Thank you Nate for your reply!! :)
This is what I got.
$ python ./scripts/get_platforms.py
macosx-10.6-universal-ucs2
(just FYI, I run this command from the galaxy-dist folder that has a path
like this one:
/Users/me/My_programs/Galaxy/galaxy-dist/ )
Okay, you should definitely be able to download prebuilt eggs for this
platform. Have you tried running python ./scripts/fetch_eggs.py multiple
times?
BTW; have you also noticed my message of 25th of January?)
Yes, thanks for the extra info.
--nate
Thank you a lot!!
Lu
On 1/30/12 18:40 , Nate Coraor wrote:
On Jan 24, 2012, at 4:16 PM, Lucilla Luzi wrote:
ERRATA CORRIGE: sorry :(
$ echo $PATH
/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
Original Message
Subject: [galaxy-dev] Some eggs are out of date...Fetch failed (Mac
OS X 10.6)
Date: Tue, 24 Jan 2012 22:06:42 +0100
Hi,
I'm pretty new to Galaxy, at least to this side.
I'm sorry to bother you with my issue, that, I read, was quite
extensively discussed previously, but even if I think to have followed
correctly the instruction and further suggestions, I'm still not able to
overcome the problem.
I'm trying to install a local instance of Galaxy on my MAC (OS X10.6.8)
My Python version is 2.6.1 and I just installed Mercurial 2.0.2 for MacOS
X 10.6.
FYI
$ python --version
Python 2.6.1
--- wrong ---see above
$ echo $PATH
/Users/myName/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
When I try to run the run.sh I get the error attached below.
Can you envisage a possible reason why I'm getting this error?
Sorry for the naive admission, but from the error message
I'm not even capable to understand which are the missing eggs...
If I'd have ignored a previous post with the solution, I apologize in
advance.
Thank you a lot for your attention.
Hi Lu,
Could you provide the output of the following?:
% python ./scripts/get_platforms.py
Thanks,
--nate
Lu
--
$ sh run.sh
Some eggs are out of date, attempting to fetch...
Traceback (most recent call last):
File ./scripts/fetch_eggs.py, line 30, in module
c.resolve() # Only fetch eggs required by the config
File
/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 345, in resolve
egg.resolve()
File
/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 195, in resolve
return self.version_conflict( e.args[0], e.args[1] )
File
/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py,
line 226, in version_conflict
r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ),
env, egg.fetch )
File
/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py,
line 518, in resolve
raise DistributionNotFound(req) # XXX put more info here
pkg_resources.DistributionNotFound: numpy==1.6.0
Fetch failed
