Re: [galaxy-dev] Startup problem after upgrade
Problem solved. Due to an error during update. Restarted from scratch. Bertrand Pitollat. -Message d'origine- De : Bertrand PITOLLAT [mailto:bertrand.pitol...@cirad.fr] Envoyé : mercredi 3 juillet 2013 16:37 À : 'galaxy-dev@lists.bx.psu.edu' Cc : 'Adam Brenner' Objet : RE: [galaxy-dev] Startup problem after upgrade Template/root directory is missing from my file-system since last update. I have cloned the repository. It seems to miss too. Is there any problem with the repo ? Thankx. -Message d'origine- De : Adam Brenner [mailto:aebre...@uci.edu] Envoyé : mercredi 3 juillet 2013 07:51 À : Bertrand PITOLLAT Cc : galaxy-dev@lists.bx.psu.edu Objet : Re: [galaxy-dev] Startup problem after upgrade When you updated, did you download all the files? Was their any conflicts during the update? It appears you are missing a file. Cant locate template for uri 'root/index.mako' Run 'hg update'... -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Tue, Jul 2, 2013 at 8:10 AM, Bertrand PITOLLAT wrote: > Hi, > > > > I have just upgraded my galaxy instance. > > > > When trying to access my galaxy instance home page, I get the > following error : > > > > 195.221.174.40 - - [02/Jul/2013:15:34:23 +0200] "GET / HTTP/1.1" 500 - "-" > "Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/27.0.1453.116 Safari/537.36" > > Error - : Cant locate > template for uri 'root/index.mako' > > URL: http://marmadais.cirad.fr:7090/ > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/middlew > are/error.py', > line 149 in __call__ > > app_iter = self.application(environ, sr_checker) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/pas > te/recursive.py', > line 84 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/pas > te/httpexceptions.py', > line 633 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py > ', > line 132 in __call__ > > return self.handle_request( environ, start_response ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py > ', > line 190 in handle_request > > body = method( trans, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/webapps/galaxy/contro > llers/root.py', > line 39 in index > > params=kwd ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init_ > _.py', > line 957 in fill_template > > return self.fill_template_mako( filename, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init_ > _.py', > line 964 in fill_template_mako > > template = self.webapp.mako_template_lookup.get_template( filename ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Mako-0.4.1-py2.6.egg/mako/l > ookup.py', > line 221 in get_template > > "Cant locate template for uri %r" % uri) > > TopLevelLookupException: Cant locate template for uri 'root/index.mako' > > > > Any help welcome. > > > > Bertrand. > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Startup problem after upgrade
Template/root directory is missing from my file-system since last update. I have cloned the repository. It seems to miss too. Is there any problem with the repo ? Thankx. -Message d'origine- De : Adam Brenner [mailto:aebre...@uci.edu] Envoyé : mercredi 3 juillet 2013 07:51 À : Bertrand PITOLLAT Cc : galaxy-dev@lists.bx.psu.edu Objet : Re: [galaxy-dev] Startup problem after upgrade When you updated, did you download all the files? Was their any conflicts during the update? It appears you are missing a file. Cant locate template for uri 'root/index.mako' Run 'hg update'... -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Tue, Jul 2, 2013 at 8:10 AM, Bertrand PITOLLAT wrote: > Hi, > > > > I have just upgraded my galaxy instance. > > > > When trying to access my galaxy instance home page, I get the > following error : > > > > 195.221.174.40 - - [02/Jul/2013:15:34:23 +0200] "GET / HTTP/1.1" 500 - "-" > "Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/27.0.1453.116 Safari/537.36" > > Error - : Cant locate > template for uri 'root/index.mako' > > URL: http://marmadais.cirad.fr:7090/ > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/middlew > are/error.py', > line 149 in __call__ > > app_iter = self.application(environ, sr_checker) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/pas > te/recursive.py', > line 84 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/pas > te/httpexceptions.py', > line 633 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py > ', > line 132 in __call__ > > return self.handle_request( environ, start_response ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py > ', > line 190 in handle_request > > body = method( trans, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/webapps/galaxy/contro > llers/root.py', > line 39 in index > > params=kwd ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init_ > _.py', > line 957 in fill_template > > return self.fill_template_mako( filename, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init_ > _.py', > line 964 in fill_template_mako > > template = self.webapp.mako_template_lookup.get_template( filename ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Mako-0.4.1-py2.6.egg/mako/l > ookup.py', > line 221 in get_template > > "Cant locate template for uri %r" % uri) > > TopLevelLookupException: Cant locate template for uri 'root/index.mako' > > > > Any help welcome. > > > > Bertrand. > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Startup problem after upgrade
When you updated, did you download all the files? Was their any conflicts during the update? It appears you are missing a file. Cant locate template for uri 'root/index.mako' Run 'hg update'... -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebre...@uci.edu On Tue, Jul 2, 2013 at 8:10 AM, Bertrand PITOLLAT wrote: > Hi, > > > > I have just upgraded my galaxy instance. > > > > When trying to access my galaxy instance home page, I get the following > error : > > > > 195.221.174.40 - - [02/Jul/2013:15:34:23 +0200] "GET / HTTP/1.1" 500 - "-" > "Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) > Chrome/27.0.1453.116 Safari/537.36" > > Error - : Cant locate > template for uri 'root/index.mako' > > URL: http://marmadais.cirad.fr:7090/ > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/middleware/error.py', > line 149 in __call__ > > app_iter = self.application(environ, sr_checker) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/recursive.py', > line 84 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/httpexceptions.py', > line 633 in __call__ > > return self.application(environ, start_response) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py', > line 132 in __call__ > > return self.handle_request( environ, start_response ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py', > line 190 in handle_request > > body = method( trans, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/webapps/galaxy/controllers/root.py', > line 39 in index > > params=kwd ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init__.py', > line 957 in fill_template > > return self.fill_template_mako( filename, **kwargs ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init__.py', > line 964 in fill_template_mako > > template = self.webapp.mako_template_lookup.get_template( filename ) > > File > '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Mako-0.4.1-py2.6.egg/mako/lookup.py', > line 221 in get_template > > "Cant locate template for uri %r" % uri) > > TopLevelLookupException: Cant locate template for uri 'root/index.mako' > > > > Any help welcome. > > > > Bertrand. > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Startup problem after upgrade
Hi, I have just upgraded my galaxy instance. When trying to access my galaxy instance home page, I get the following error : 195.221.174.40 - - [02/Jul/2013:15:34:23 +0200] "GET / HTTP/1.1" 500 - "-" "Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/27.0.1453.116 Safari/537.36" Error - : Cant locate template for uri 'root/index.mako' URL: http://marmadais.cirad.fr:7090/ File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/middleware/ error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/r ecursive.py', line 84 in __call__ return self.application(environ, start_response) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Paste-1.7.5.1-py2.6.egg/paste/h ttpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/webapps/galaxy/controller s/root.py', line 39 in index params=kwd ) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init__.py ', line 957 in fill_template return self.fill_template_mako( filename, **kwargs ) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/lib/galaxy/web/framework/__init__.py ', line 964 in fill_template_mako template = self.webapp.mako_template_lookup.get_template( filename ) File '/SATA/bioinfo/galaxy_dev/galaxy_dist/eggs/Mako-0.4.1-py2.6.egg/mako/looku p.py', line 221 in get_template "Cant locate template for uri %r" % uri) TopLevelLookupException: Cant locate template for uri 'root/index.mako' Any help welcome. Bertrand. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
