[galaxy-dev] This tool was disabled before the job completed. Please contact your Galaxy administrator.
Hi devs, I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this? File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py, line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py, line 130, in __init__ self.job_manager = manager.JobManager( self ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py, line 37, in __init__ self.job_handler.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 35, in start self.job_queue.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 78, in start self.__check_jobs_at_startup() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 109, in __check_jobs_at_startup JobWrapper( job, self ).fail( 'This tool was disabled before the job completed. Please contact your Galaxy administrator.' ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py, line 761, in fail self.app.object_store.update_from_file(dataset.dataset, create=True) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 349, in update_from_file self.create(obj, **kwargs) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 298, in create open(path, 'w').close() # Should be rb? IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' Thanks Ravi___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] This tool was disabled before the job completed. Please contact your Galaxy administrator.
Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up. On Apr 4, 2014, at 11:16 AM, Ravi Alla ravi.a...@berkeley.edu wrote: Hi devs, I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this? File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py, line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py, line 130, in __init__ self.job_manager = manager.JobManager( self ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py, line 37, in __init__ self.job_handler.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 35, in start self.job_queue.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 78, in start self.__check_jobs_at_startup() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 109, in __check_jobs_at_startup JobWrapper( job, self ).fail( 'This tool was disabled before the job completed. Please contact your Galaxy administrator.' ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py, line 761, in fail self.app.object_store.update_from_file(dataset.dataset, create=True) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 349, in update_from_file self.create(obj, **kwargs) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 298, in create open(path, 'w').close() # Should be rb? IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' Thanks Ravi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] This tool was disabled before the job completed. Please contact your Galaxy administrator.
Never mind, I figured it out. I deleted all instances of the job and the temp dataset. Thanks R On Apr 4, 2014, at 2:29 PM, Ravi Alla ravi.a...@berkeley.edu wrote: Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up. On Apr 4, 2014, at 11:16 AM, Ravi Alla ravi.a...@berkeley.edu wrote: Hi devs, I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this? File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py, line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py, line 130, in __init__ self.job_manager = manager.JobManager( self ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py, line 37, in __init__ self.job_handler.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 35, in start self.job_queue.start() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 78, in start self.__check_jobs_at_startup() File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py, line 109, in __check_jobs_at_startup JobWrapper( job, self ).fail( 'This tool was disabled before the job completed. Please contact your Galaxy administrator.' ) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py, line 761, in fail self.app.object_store.update_from_file(dataset.dataset, create=True) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 349, in update_from_file self.create(obj, **kwargs) File /srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py, line 298, in create open(path, 'w').close() # Should be rb? IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' Thanks Ravi ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
