Re: [galaxy-dev] Timeout and Galaxy - Cluster could not complete job

2012-02-28 Thread Edward Kirton
i believe the latest stable update of galaxy included changes to drmaa.py which allows a job to be rechecked indefinitely with regard to scheduler communication errors, so perhaps your "cluster could not complete job" errors are due to a filesystem race condition, whereby the cluster node completes

[galaxy-dev] Timeout and Galaxy - Cluster could not complete job

2012-02-22 Thread Aurélien Bernard
Hello everybody :) Today, I have a question related to timeout management in Galaxy. More particularly, I'm searching for a way to set (in a configuration file if possible) all timeouts related to DRMAA and timeouts related to communication between Galaxy and SGE. My goal is to increase c