]
Sent: woensdag 12 november 2014 17:18
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edu; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Yes, this is correct. Do you really need to compile it by yourself? This is
really a pain, I tried it during the R2
11:25
To: galaxy-dev@lists.bx.psu.edu mailto:galaxy-dev@lists.bx.psu.edu;
Lukasse, Pieter; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
Hi,
I have a Bioconductor package which depends
@lists.bx.psu.edu; Dave Bouvier
*Subject:* Re: [galaxy-dev] Tool shed environment dependency - HOW TO
do this?
Yes, this is correct. Do you really need to compile it by yourself?
This is really a pain, I tried it during the R2 lifetime and this wasn't fun.
2014-11-12 17:10 GMT+01:00 Lukasse
To: galaxy-dev@lists.bx.psu.edu; Lukasse, Pieter; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use
: donderdag 30 oktober 2014 11:25
To: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu; Lukasse,
Pieter; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
Hi,
I have
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO
do this?
Hi Bjoern,
Thanks for this reply. I will have to try referring to the R_ROOT_DIR
from another tool_dependency. If it doesn't work I'll come back ;)
Regards,
Pieter
-Original Message-
From: Björn Grüning
] On Behalf Of Lukasse,
Pieter
Sent: donderdag 6 november 2014 10:02
To: 'Björn Grüning'; galaxy-dev@lists.bx.psu.edu; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO
do this?
Hi Bjoern,
Thanks for this reply. I will have to try referring to the R_ROOT_DIR
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use the setup_r_environment trick.
I already got a tool_dependency.xml working that installs R 3.1.1 and the
necessary Bioconductor packages using bioclite method (see attachment). Now my
question is:
*
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use the setup_r_environment trick.
Why? Do you need a new release? The latest current release in the Tool
Shed is R 3.1.0. If this is not enough we
