Re: [galaxy-dev] Toolshed bug related to readme files
Hello Lance, This issue should be corrected in change set 9994:f8cf776ff12f, which is currently running on both public tool sheds. Thanks for reporting this! Greg Von Kuster On Jun 12, 2013, at 6:25 AM, Greg Von Kuster g...@bx.psu.edu wrote: Hi Lance, Thanks for the information - I'll have a fix out shortly. Greg Von Kuster On Jun 11, 2013, at 10:12 PM, Lance Parsons lpars...@princeton.edu wrote: I'm running the latest stable. The 500 error seems to be coming from the toolshed. Do you also get a 500 error at the toolshed URL in my previous message? There is nothing other than standard info line from the request in my pasted log. I'm not able to get to the log right now, but I'll send it once I get a chance tomorrow. -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University Original message From: Greg Von Kuster g...@bx.psu.edu Date: 06/11/2013 10:00 PM (GMT-05:00) To: Lance Parsons lpars...@princeton.edu Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Toolshed bug related to readme files Hi Lance, What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall? Thanks, Greg Von Kuster On Jun 11, 2013, at 3:52 PM, Lance Parsons lpars...@princeton.edu wrote: I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard). When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error: http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picardowner=devteamchangeset_revision=e0232cbac965 Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aaece023b0ae74db696 -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Toolshed bug related to readme files
I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard). When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error: http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picardowner=devteamchangeset_revision=e0232cbac965 Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aaece023b0ae74db696 -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Toolshed bug related to readme files
Hi Lance, What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall? Thanks, Greg Von Kuster On Jun 11, 2013, at 3:52 PM, Lance Parsons lpars...@princeton.edu wrote: I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard). When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error: http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picardowner=devteamchangeset_revision=e0232cbac965 Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aaece023b0ae74db696 -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Toolshed bug related to readme files
I'm running the latest stable. The 500 error seems to be coming from the toolshed. Do you also get a 500 error at the toolshed URL in my previous message? There is nothing other than standard info line from the request in my pasted log. I'm not able to get to the log right now, but I'll send it once I get a chance tomorrow. -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University Original message From: Greg Von Kuster g...@bx.psu.edu Date: 06/11/2013 10:00 PM (GMT-05:00) To: Lance Parsons lpars...@princeton.edu Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Toolshed bug related to readme files Hi Lance, What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall? Thanks, Greg Von Kuster On Jun 11, 2013, at 3:52 PM, Lance Parsons lpars...@princeton.edu wrote: I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard). When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error: http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picardowner=devteamchangeset_revision=e0232cbac965 Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aaece023b0ae74db696 -- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
