Hi Saskia,
you need to fix that wrapper. Its a merge conflict you need to resolve
by your own (indicated by << ==).
Cheers,
Bjoern
> I am working on putting a tool into the toolshed. I have a bash script
> wrapper. I uploaded the first version fine, but when I wanted to
> upload a revision, some unwanted characters are inserted around the
> revised function of my code (see bottom) ..the inserted "<< local"
> etc strings are causing my script to fail of course. How can I prevent
> this from happening?
>
> Saskia
>
>
> snippet of the code:
>
>
> if [[ ! -s $rfile ]]
> then
> dummycol=${addcols:2}
> outputcol=${dummycol//",B."/""}
> <<< local
> echo -e "${col_chr_name}\t${col_start_name}\t${col_end_name}\t
> ${col_ref_name}\t${col_obs_name}\t$outputcol" > $rfile
> cat $rfile
> ===
> numcommas=`echo "$addcols" | grep -o "," | wc -l`
> echo "numcolums: $numcommas"
>
> awk 'BEGIN{FS="\t";OFS="\t"}{
> if(FNR==1)
> print $0,"'"$outputcol"'";
> else{
> printf $0
> for(i=0;i<="'"$numcommas"'"+1;i++)
> printf "\t"
> printf "\n"
> }
> }END{}' $ofile > tempofile
>
> mv tempofile $ofile
>
> return
> >>> other
> fi
>
>
>
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