Hi Vijay,
For right now, using a Custom reference genome with these tools is the
best solution:
http://wiki.galaxyproject.org/Support#Custom_reference_genome
This genome in Galaxy is sourced from UCSC, as you probably know:
http://wiki.galaxyproject.org/Support#Reference_genomes
The longer-term strategy for new/updated indexes will be worked out
soon. Our immediate goal was to get the tools out on Main as soon as
possible.
Thanks,
Jen
Galaxy team
On 8/13/13 1:20 PM, Vijay Kumar wrote:
Dear sir,
please add reference genome of Zebra finch genome in Bowtie2 and
Tophat2 option in galaxy. thank u
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
--
Jennifer Hillman-Jackson
http://galaxyproject.org
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
