Hi,
We are running Bowtie 0.12.7 currently. I've updated the wiki to
reflect the current version of the tools we're using (thanks for
letting us know it was out of date!).
Regards,
Kelly
On Jan 13, 2011, at 11:39 AM, Branden Timm wrote:
Thanks for the tip, Kelly - I tested this on my
Hi,
Updating to the latest revision has solved the bowtie hanging
problem. Thanks very much for your help!
-Branden
On 1/13/2011 10:52 AM, Kelly Vincent wrote:
Hi,
We are running Bowtie 0.12.7 currently. I've updated the wiki to
reflect the current version of the tools we're using
Hi All,
I am seeing a strange problem with Galaxy and bowtie. Here is the
scenario:
1) I run bowtie for Illumina data (bowtie 0.12.5 Linux x86_64) on a
fastqsanger input generated by FASTQ-Groomer
2) On the system, I see the bowtie_wrapper and bowtie subprocesses
start, with bowtie
Branden,
Which revision of Galaxy are you using? What this sounds like is that
it is taking a long time to set the metadata on the resulting SAM
file, i.e., after the Bowtie job has run. Prior to 4698:48a81f235356
(12/1/10), all the lines in a large SAM file would be read to
determine
