Re: [galaxy-dev] code example for improved error handling

2012-08-17 Thread Scott McManus
To: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] code example for improved error handling On 08/16/2012 03:02 PM, Birgit Crain wrote: Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so

Re: [galaxy-dev] code example for improved error handling

2012-08-17 Thread Birgit Crain
...@g.uky.edumailto:jmpa...@g.uky.edu Date: Thursday, August 16, 2012 12:29 PM To: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] code example for improved error handling On 08/16/2012 03:02 PM, Birgit Crain wrote

Re: [galaxy-dev] code example for improved error handling

2012-08-17 Thread Scott McManus
Please see http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax . There is a section for stdio, regex, and exit_code tag sets. The documentation applies to the latest galaxy-dist, though most of what's mentioned (aside from updating stdout and stderr with warning messages) is

[galaxy-dev] code example for improved error handling

2012-08-16 Thread Birgit Crain
Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error handling. Is there any sample code or documentation available? Thanks Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete

Re: [galaxy-dev] code example for improved error handling

2012-08-16 Thread John Patterson
On 08/16/2012 03:02 PM, Birgit Crain wrote: Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error handling. Is there any sample code or documentation available? Thanks *Birgit Crain, Ph.D.*| Sr.

Re: [galaxy-dev] code example for improved error handling

2012-08-16 Thread Peter Cock
On Thu, Aug 16, 2012 at 8:02 PM, Birgit Crain bcr...@completegenomics.com wrote: Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error handling. Is there any sample code or documentation available?

Re: [galaxy-dev] code example for improved error handling

2012-08-16 Thread Birgit Crain
@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] code example for improved error handling On 08/16/2012 03:02 PM, Birgit Crain wrote: Hi I'm writing a tools for an executable that writes results to stdout and reports success message to stderr, so it really need the improved error