Hi,
If you have EMBOSS installed you should try degapseq. Galaxy emboss tools are
available in the tool shed.
HTH,
Marc
From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
on behalf of Deepthi Theresa [deepthither...@gmail.com]
Sent: Thursday, September 27, 2012 9:45 PM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] collapse FASTA
Hi Galaxy team,
I tried to do collapse FASTA sequences for removing the duplicate reads. but
error occured due to the lowercase letters at both the ends of the sequences.
Is there any option available to clean my reads? some of my reads contains
hyphen too.
Thanks,
D.
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Deepthi Theresa Thomas Kannanayakal
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