I have a question about sending a bed to Ensembl or bam to IGV through Galaxy.
I have setup a galaxy on my own pccluster. Everything is fine. But when I want to display the bam file to IGV, I got the error message about error loading files. "Error loading http://xxx.xx.xxx/galaxy/display_application/xxxxxxxxxx/data/galaxy_xxxxx.ba m: An error occurred while accessing: http://xxx.xx.xxx/galaxy/display_application/xxxxxxxxxx/data/galaxy_xxxxx.ba m Read error; BinaryCode in readmode; streamed file (filename not available)" When I use the url to get the file directly, it can be successfully downloaded. I meet the same situation when I send the bed file to display at Ensembl. The tract will not be shown on Ensembl. When I want to send the bed manually through url, I also get the error message about loading files. "Unable to access file. Server response: 500 read timeout" Does anyone know how to solve the problem?? Thanks a lot!! Best Regards, Terry Yeh
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
