Re: [galaxy-dev] finding parts of tool_conf.xml

2013-05-28 Thread Dannon Baker
I'm assuming you're referring to main.g2.bx.psu.edu's tool configuration as a reference. Some of these components are installed via the tool shed, and others may have been manually added to main and are not included in the base tool_conf.xml.sample. I may be able to point you in the right

Re: [galaxy-dev] finding parts of tool_conf.xml

2013-05-28 Thread Dannon Baker
So tool_conf.xml only contains references to the other tool wrapper files. Those tools are either be in the distribution (which you can find in your galaxy-central/tools directory) or in the toolshed, at toolshed.g2.bx.psu.edu. -Dannon On Tue, May 28, 2013 at 1:32 PM, vijayalakshmi

[galaxy-dev] finding parts of tool_conf.xml

2013-05-21 Thread vijayalakshmi
Hi all, I am trying to get the *tool_conf.xml* section code corresponding to the following topics listed below. I am unable to find it in both the default build and the stable build in bitbucket. If you can point me to where I can find it, it'd be swell. 1) NGS: Variant detection 2) NGS:

[galaxy-dev] finding parts of tool_conf.xml

2013-05-21 Thread vijayalakshmi
Hi all, I am trying to get the *tool_conf.xml* section code corresponding to the following topics listed below. I am unable to find it in both the default build and the stable build in bitbucket. If you can point me to where I can find it, it'd be swell. 1) NGS: Variant detection 2) NGS: