Re: [galaxy-dev] fyi: can't upload to toolshed

2011-07-19 Thread Greg Von Kuster
Hello Ed,

This one was tough to track down, but I believe I have it resolved.  On Linux, 
the mercurial api's call to commit seems to bump into issues intermittently, 
throws an exception, and rolls back the transaction.  Although I can reproduce 
it on Linux, I cannot produce this behavior on a Mac.  I've added exception 
handling in the latest version of the tool shed that uses a different approach 
to committing the changes whenever the intermittent exception is thrown.

Thanks for finding this issue, and please let me know if you bump into any 
problems in the future.

Greg Von Kuster


On Jul 15, 2011, at 1:20 PM, Edward Kirton wrote:

> it was for an upload of MUSCLE.  the error only occurred when i uploaded the 
> XML file uncompressed.  it worked fine later when i put it in a tarball.
> 
> On Fri, Jul 15, 2011 at 6:48 AM, Greg Von Kuster  wrote:
> Hello Ed,
> 
> Looking at the logs, I see that you uploaded to your Roche454 tool suite 
> repo.  Is that correct?  I don't see any exceptions in the logs, so not sure 
> what happened.  Are you still having this issue?
> 
> Thanks,
> 
> Greg Von Kuster
> 
> On Jul 14, 2011, at 9:32 PM, Edward Kirton wrote:
> 
>> Server Error
>> 
>> An error occurred. See the error logs for more information. (Turn debug on 
>> to display exception reports here) 
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> 
> Greg Von Kuster
> Galaxy Development Team
> g...@bx.psu.edu
> 
> 
> 
> 

Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu



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Re: [galaxy-dev] fyi: can't upload to toolshed

2011-07-15 Thread Greg Von Kuster
Hello Ed,

Looking at the logs, I see that you uploaded to your Roche454 tool suite repo.  
Is that correct?  I don't see any exceptions in the logs, so not sure what 
happened.  Are you still having this issue?

Thanks,

Greg Von Kuster

On Jul 14, 2011, at 9:32 PM, Edward Kirton wrote:

> Server Error
> 
> An error occurred. See the error logs for more information. (Turn debug on to 
> display exception reports here) 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>  http://lists.bx.psu.edu/

Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu



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Re: [galaxy-dev] fyi: can't upload to toolshed

2011-07-15 Thread Vipin TS
> Server ErrorAn error occurred. See the error logs for more information.
> (Turn debug on to display exception reports here)
>

My guess is that this will be a problem with your tool configuration file in
XML format.

-- Vipin
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[galaxy-dev] fyi: can't upload to toolshed

2011-07-14 Thread Edward Kirton
Server ErrorAn error occurred. See the error logs for more information.
(Turn debug on to display exception reports here)
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