Glad that everything works now for you. The Get Updates functionality
won't work since this is a new version of the tool (updated version of
HTSeq package). Since the updated version could generate different
results with the same input, Galaxy keeps the old version around for
reproducibility
I have posted an updated version of the htseq-count tool in the toolshed
that uses and updated version of the HTSEQ count package (0.5.4p1) and
hopefully addresses the installation issue you have experienced. Please
try it out and let me know if you still have problems.
Lance
Joachim Jacob
Hi Lance,
[apologies for directly emailing to you and not through the galaxy-dev
list. I will post it on the dev list later on]
I am trying to install htseq-count, but it fails during the dependency
installation of htseq.
The error I get is:
error: can't create or remove files in install
Hi Joachim,
It seems that the error is because your system is trying to install the
library files to lib64/python instead of just lib/python. For reasons I
don't quite understand, the setup.py installation fails when that
directory doesn't exist (I would think it would just create it, but
Dear galaxy team
thank you a lot for providing a complete solution for biologists to
analyse their data, i have one question about galaxy : i see that
there are a lot of tools for example for ngs, and i could not
understand or find the tool in galaxy directories, is that means that
all
Hello,
These types of tools are not rewritten, but are instead wrapped so that
they function within the Galaxy framework. Galaxy, dependent tools, and
reference datasets and indexes are all installed separately.
For the basic overview, please see:
http://getgalaxy.org
A list of Tool
If you are using Ubuntu LTS, you can use packages we are developing for Galaxy
dependencies on Bio-linux: https://launchpad.net/~nebc/+archive/galaxy
This list is currently incomplete, but steadily growing. Perhaps what you need
is here already.
Best regards,
Casey
Casey Bergman, Ph.D.
