Re: [galaxy-dev] getting API key from user/pass
Hey Eric, This is not possible (easily anyway) in the latest release of blend4j. It was on the TODO list though so I have added the functionality in the following commit: https://github.com/jmchilton/blend4j/commit/f92909fbda3616da09614b65810ebd86ce496b19 So instead of using GalaxyInstanceFactory.get(url, key) to create 'GalaxyInstance' objects, you will need to use GalaxyInstanceFactory.getFromCredentials(url, email, password). Mirrors work I had previously done in bioblend (https://github.com/afgane/bioblend/commit/07a07b99495a867a9d17bc5c1e22a3739da052ba) based on the API endpoint Martin had mentioned. Any chance you have a setup allowing you to use this without me needing to do a new release of blend4j or do you need the artifacts to be in maven central? -John On Mon, Jul 21, 2014 at 9:47 AM, Martin Čech mar...@bx.psu.edu wrote: Done. On Mon, Jul 21, 2014 at 10:30 AM, Eric Rasche rasche.e...@yandex.ru wrote: Martin, Ah, good to have the API call needed. Could this possibly be added to the wiki, perhaps on Learn/API? That particular URL doesn't seem to be in blend4j so this answers that question as well, thanks! Cheers, Eric 21.07.2014, 15:13, Martin Čech mar...@bx.psu.edu: file api/authenticate.py class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): def get_api_key( self, trans, **kwd ) * GET /api/authenticate/baseauth returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] getting API key from user/pass
Hi John, Okay, not a problem, no need to push new artifacts on my behalf. Jetty (basically all of your dependencies) aren't currently ported to android which puts that particular project on hold for me, for the time being. Thanks for being aware of this issue. Cheers, Eric 22.07.2014, 21:10, John Chilton jmchil...@gmail.com: Hey Eric, This is not possible (easily anyway) in the latest release of blend4j. It was on the TODO list though so I have added the functionality in the following commit: https://github.com/jmchilton/blend4j/commit/f92909fbda3616da09614b65810ebd86ce496b19 So instead of using GalaxyInstanceFactory.get(url, key) to create 'GalaxyInstance' objects, you will need to use GalaxyInstanceFactory.getFromCredentials(url, email, password). Mirrors work I had previously done in bioblend (https://github.com/afgane/bioblend/commit/07a07b99495a867a9d17bc5c1e22a3739da052ba) based on the API endpoint Martin had mentioned. Any chance you have a setup allowing you to use this without me needing to do a new release of blend4j or do you need the artifacts to be in maven central? -John On Mon, Jul 21, 2014 at 9:47 AM, Martin Čech mar...@bx.psu.edu wrote: Done. On Mon, Jul 21, 2014 at 10:30 AM, Eric Rasche rasche.e...@yandex.ru wrote: Martin, Ah, good to have the API call needed. Could this possibly be added to the wiki, perhaps on Learn/API? That particular URL doesn't seem to be in blend4j so this answers that question as well, thanks! Cheers, Eric 21.07.2014, 15:13, Martin Čech mar...@bx.psu.edu: file api/authenticate.py class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): def get_api_key( self, trans, **kwd ) * GET /api/authenticate/baseauth returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] getting API key from user/pass
On Tue, Jul 22, 2014 at 3:13 PM, Eric Rasche rasche.e...@yandex.ru wrote: Hi John, Okay, not a problem, no need to push new artifacts on my behalf. Jetty (basically all of your dependencies) aren't currently ported to android which puts that particular project on hold for me, for the time being. Hmm... that is too bad. They should do that - seems like Android would be a key platform for a web service client library. Oh well. -John Thanks for being aware of this issue. Cheers, Eric 22.07.2014, 21:10, John Chilton jmchil...@gmail.com: Hey Eric, This is not possible (easily anyway) in the latest release of blend4j. It was on the TODO list though so I have added the functionality in the following commit: https://github.com/jmchilton/blend4j/commit/f92909fbda3616da09614b65810ebd86ce496b19 So instead of using GalaxyInstanceFactory.get(url, key) to create 'GalaxyInstance' objects, you will need to use GalaxyInstanceFactory.getFromCredentials(url, email, password). Mirrors work I had previously done in bioblend (https://github.com/afgane/bioblend/commit/07a07b99495a867a9d17bc5c1e22a3739da052ba) based on the API endpoint Martin had mentioned. Any chance you have a setup allowing you to use this without me needing to do a new release of blend4j or do you need the artifacts to be in maven central? -John On Mon, Jul 21, 2014 at 9:47 AM, Martin Čech mar...@bx.psu.edu wrote: Done. On Mon, Jul 21, 2014 at 10:30 AM, Eric Rasche rasche.e...@yandex.ru wrote: Martin, Ah, good to have the API call needed. Could this possibly be added to the wiki, perhaps on Learn/API? That particular URL doesn't seem to be in blend4j so this answers that question as well, thanks! Cheers, Eric 21.07.2014, 15:13, Martin Čech mar...@bx.psu.edu: file api/authenticate.py class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): def get_api_key( self, trans, **kwd ) * GET /api/authenticate/baseauth returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] getting API key from user/pass
John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers,Eric -- Eric RascheProgrammer IICenter for Phage TechnologyTexas AM UnivesityCollege Station, TX 77843Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] getting API key from user/pass
file *api/authenticate.py* class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): def get_api_key( self, trans, **kwd ) * *GET /api/authenticate/baseauth* returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 http://tel:4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] getting API key from user/pass
Martin,Ah, good to have the API call needed. Could this possibly be added to the wiki, perhaps on Learn/API?That particular URL doesn't seem to be in blend4j so this answers that question as well, thanks!Cheers,Eric21.07.2014, 15:13, "Martin Čech" mar...@bx.psu.edu: file api/authenticate.py class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): """ def get_api_key( self, trans, **kwd ) * GET /api/authenticate/baseauth returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest """ On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/-- Eric RascheProgrammer IICenter for Phage TechnologyTexas AM UnivesityCollege Station, TX 77843Ph: 4046922048___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] getting API key from user/pass
Done. On Mon, Jul 21, 2014 at 10:30 AM, Eric Rasche rasche.e...@yandex.ru wrote: Martin, Ah, good to have the API call needed. Could this possibly be added to the wiki, perhaps on Learn/API https://wiki.galaxyproject.org/Learn/API? That particular URL doesn't seem to be in blend4j so this answers that question as well, thanks! Cheers, Eric 21.07.2014, 15:13, Martin Čech mar...@bx.psu.edu: file api/authenticate.py class AuthenticationController( BaseAPIController, CreatesApiKeysMixin ): @web.expose_api_anonymous def get_api_key( self, trans, **kwd ): def get_api_key( self, trans, **kwd ) * GET /api/authenticate/baseauth returns an API key for authenticated user based on BaseAuth headers :returns: api_key in json format :rtype: dict :raises: ObjectNotFound, HTTPBadRequest On Mon, Jul 21, 2014 at 10:06 AM, Eric Rasche rasche.e...@yandex.ru wrote: John, I'm looking to use blend4j, and I was wondering if there was a way to obtain the user's API key from a username/password pair? Cheers, Eric -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Eric Rasche Programmer II Center for Phage Technology Texas AM Univesity College Station, TX 77843 Ph: 4046922048 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
