Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-10 Thread John Chilton
Message- From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of John-Paul Robinson Sent: Monday, June 09, 2014 3:08 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-10 Thread John-Paul Robinson
: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems There appears to be some inconsistent use of tempfile.mkstemp() within upload.py that causes problems when users import data files to galaxy from a cluster directory via the upload process and import/temp/dataset

Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-10 Thread John Chilton
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of John-Paul Robinson Sent: Monday, June 09, 2014 3:08 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems There appears to be some inconsistent use

[galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-09 Thread John-Paul Robinson
There appears to be some inconsistent use of tempfile.mkstemp() within upload.py that causes problems when users import data files to galaxy from a cluster directory via the upload process and import/temp/dataset directories are on different file systems. The issue manifests when Galaxy's job

Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-09 Thread Curtis Hendrickson (Campus)
Subject: Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems Hi JPR, I had the same questions while trying to figure out a fool-proof way to allow users to import files into galaxy on our Cluster. I couldn't exactly figure out, nor did I have the time to really

Re: [galaxy-dev] inconsistent use of tempfile.mkstemp during upload causes problems

2014-06-09 Thread John-Paul Robinson
] inconsistent use of tempfile.mkstemp during upload causes problems There appears to be some inconsistent use of tempfile.mkstemp() within upload.py that causes problems when users import data files to galaxy from a cluster directory via the upload process and import/temp/dataset directories