[galaxy-dev] installing multiple versions of a tool / path configuration

2011-11-15 Thread Clare Sloggett
Hi all, I am a little confused as to the right way to configure my installed NGS tools. From the documentation I've found and from looking at the xml/python wrappers, it looks to me like the NGS tool wrappers simply call the tools and assume they will be in the galaxy account's PATH. For

Re: [galaxy-dev] installing multiple versions of a tool / path configuration

2011-11-15 Thread Clare Sloggett
Great! Thanks James, this is exactly what I need. On Wed, Nov 16, 2011 at 2:20 PM, James Taylor ja...@jamestaylor.org wrote: On Nov 15, 2011, at 9:59 PM, Clare Sloggett wrote: If this is the case, what is the best way to install and maintain two versions of the same tool? I can write code

Re: [galaxy-dev] installing multiple versions of a tool / path configuration

2011-11-15 Thread Clare Sloggett
Looks like it's working! The problem I had run into, in hindsight, was a) I hadn't set tool_dependency_dir as I didn't know about it b) if I had set it, I was installing tools to $SW/tool-name/version-number/ but the default tool wrappers in galaxy-dist don't have version numbers set, so they will