Re: [galaxy-dev] latest stable data management interface

2014-02-26 Thread Langhorst, Brad 
Hi Dan:


Thanks I have installed these test data managers...


I miss some of the features of the old system

 e.g. lookup by name at ucsc or ncbi, automatic building of a specified set of 
indices after download.

Are those cool features really gone now or did i miss something?



The second dialog (choose the source for the reference genome) is not at all 
clear.

is this going to reorder what has been downloaded?


Is there a reason not to always use GATK - ( i think that means,  by chr size, 
descending)?

GATK is the only tool I know that is picky about reference order.




Brad


From: Daniel Blankenberg 
Sent: Wednesday, February 26, 2014 2:58 PM
To: Langhorst, Brad
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] latest stable data management interface

Hi Brad,

Galaxy doesn't come with any Data Managers in the distribution, so you'll need 
to install them from a toolshed. Here is the Data Manager category with with is 
currently available in the test toolshed.: 
http://testtoolshed.g2.bx.psu.edu/repository/browse_repositories_in_category?id=83f763caf629aa54

In the future we'll make the fact that there aren't any Data Managers installed 
more obvious.  Please let us know if you encounter further difficulties.


Thanks for using Galaxy,

Dan


On Feb 26, 2014, at 2:47 PM, Langhorst, Brad 
mailto:langho...@neb.com>> wrote:

When i click on the manage local data link i only see this:



none of which is clickable.

?Am I doing something silly?

What am i missing?

Brad
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Re: [galaxy-dev] latest stable data management interface

2014-02-26 Thread Daniel Blankenberg 
Hi Brad,

Galaxy doesn’t come with any Data Managers in the distribution, so you’ll need 
to install them from a toolshed. Here is the Data Manager category with with is 
currently available in the test toolshed.: 
http://testtoolshed.g2.bx.psu.edu/repository/browse_repositories_in_category?id=83f763caf629aa54
 

In the future we’ll make the fact that there aren't any Data Managers installed 
more obvious.  Please let us know if you encounter further difficulties.


Thanks for using Galaxy,

Dan


On Feb 26, 2014, at 2:47 PM, Langhorst, Brad  wrote:

> When i click on the manage local data link i only see this:
> 
> 
> 
> none of which is clickable.
> 
> ​Am I doing something silly?
> 
> What am i missing?
> 
> Brad
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  http://lists.bx.psu.edu/
> 
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/mailinglists/

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[galaxy-dev] latest stable data management interface

2014-02-26 Thread Langhorst, Brad 
When i click on the manage local data link i only see this:


[cid:1d03bde5-8e93-4335-b4e6-25a5904b5dfc]


none of which is clickable.


?Am I doing something silly?


What am i missing?


Brad
<>___
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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