Re: [galaxy-dev] link file bug in the new version

2011-09-06 Thread Nate Coraor
remy d1 wrote: > Hello Nate, > > It is not easy... > > I think it is in this : > > if dataset.type in ( 'server_dir', 'path_paste' ) and link_data_only == > >> 'link_to_files': > > > > # Never alter a file that will not be copied to Galaxy's local file > >> store. > > > > if

Re: [galaxy-dev] link file bug in the new version

2011-09-05 Thread remy d1
Hello Nate, It is not easy... I think it is in this : if dataset.type in ( 'server_dir', 'path_paste' ) and link_data_only == >> 'link_to_files': > > # Never alter a file that will not be copied to Galaxy's local file >> store. > > if datatype.dataset_content_needs_grooming(

Re: [galaxy-dev] link file bug in the new version

2011-09-02 Thread Nate Coraor
remy d1 wrote: > Hi, > > We found a little problem in the new galaxy release. When we upload a > dataset library from filesystem : > > Admin > Manage data libraries > create new data library > Add dataset > > Upload files from filesystem path > Link to files without copying > > If galaxy user is

[galaxy-dev] link file bug in the new version

2011-09-02 Thread remy d1
Hi, We found a little problem in the new galaxy release. When we upload a dataset library from filesystem : Admin > Manage data libraries > create new data library > Add dataset > Upload files from filesystem path > Link to files without copying If galaxy user is the owner of this file or if he