Re: [galaxy-dev] macs error for chipseq data

2013-01-16 Thread James Taylor
This is great. For the Galaxy tools, will you be able to submit wrappers to the toolshed? This should make it easier for users to install into their local Galaxy instances. Thanks! -- James Taylor, Assistant Professor, Biology/CS, Emory University On Wed, Jan 16, 2013 at 8:38 AM, Quang Trinh

Re: [galaxy-dev] macs error for chipseq data

2013-01-16 Thread Quang Trinh
Hi James, Yes, we will be putting everything on toolshed shortly. Arthur ( cc'ed ), my student from OICR, will be taking lead on this. Thanks, Q On Wed, Jan 16, 2013 at 11:06 AM, James Taylor ja...@jamestaylor.org wrote: This is great. For the Galaxy tools, will you be able to submit

[galaxy-dev] macs error for chipseq data

2013-01-11 Thread Jennifer Jackson
Hi Kathryn, I am going to post this back to the galaxy-dev list and cc Dannon so that he or or one of the developers more experienced with troubleshooting cloud issues can help. My guess is that there is a path problem (covered in the first wiki link) but by no means is that the only

Re: [galaxy-dev] macs error for chipseq data

2013-01-11 Thread Dannon Baker
There's an issue with the MACS installation on the current cloud tools volume (which will be fixed with the next volume update coming soon). For existing instances, you can get MACS working correctly by executing the following two commands (which change the default version of macs used) after