Hi Derrick,
i think during the migration something like that was printed on your
screen:
-
The tool dependencies listed above will be installed along with the
repositories if you add the 'install_dependencies' option to the above
command like this:
Hi Bjorn,
I saw that printed message but I decided not to append install_dependencies
flag to the command because we have had BWA binary in the galaxy running
environment.
I don't think the use of install_dependencies is compulsory?
Derrick
On Mon, Oct 8, 2012 at 5:14 PM, Björn Grüning
Hi guys,
I have updated the galaxy to Oct 5 dist, and BWA has been reinstalled via
the migration script. However, I couldn't find any entry has been added
in migrated_tools_conf.xml (thus the BWA tools are not display in the tool
panel).
I check in the admin Installed tool shed repositories
