Hi David,
numpy and scipy are not included as modules with the galaxy
distribution, but you can use the repositories from the toolshed and
depend on them.
http://toolshed.g2.bx.psu.edu/view/iuc/package_numpy_1_7
http://toolshed.g2.bx.psu.edu/view/iuc/package_scipy_0_12
An example usage is here:
https://github.com/bgruening/galaxytools/blob/master/statistics/tool_dependencies.xml
Hope that helps!
Bjoern
Are numpy and scipy included with the standard python modules/eggs
supplied by galaxy?
David Hoover
Helix Systems Staff
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