Hi David,
Apologies for the late reply, but were trying to get you a complete
answer, but it is not ready. Meanwhile, perhaps this will help.
So, for phastCons:
Needs to be converted to binned array files using
wiggle_to_binned_array.py from bx-python.
The loc file points to a base directo
Does anyone have a clear explanation of what files are required/available for
Get Genomic Scores -> Aggregate datapoints, Compute phastOdds
(binned_scores.loc and phastOdds.loc files)? I know there are .mod and .pp
files and .wigFix files from UCSC, but I can't figure out exactly what Galaxy
i
