[galaxy-dev] possible bug

2013-07-18 Thread Berner, Thomas
Hey guys, we found a curios bug, but it is a little bit tricky to explain. Here is an example: - Click on Concatenate datasets tail-to-head - add a new data set - click on the first data field and select your data set of choice - press tab to get to the next data set an select the second

[galaxy-dev] Possible bug in managing tool shed repositories

2013-06-19 Thread Joachim Jacob | VIB |
Hi all, Before posting on Trello, perhaps someone can confirm that it is a bug: 1. In the admin menu, go to 'Manage installed tool shed repositories' 2. click on a tool that you have installed with dependencies (!) 3. In the top right 'repository actions', choose 'Manage tool dependencies' 4.

Re: [galaxy-dev] Possible bug in managing tool shed repositories

2013-06-19 Thread Björn Grüning
Hi Joachim, confirmed, it seems like a bug. Cheers, Björn Hi all, Before posting on Trello, perhaps someone can confirm that it is a bug: 1. In the admin menu, go to 'Manage installed tool shed repositories' 2. click on a tool that you have installed with dependencies (!) 3. In the

Re: [galaxy-dev] Possible bug in managing tool shed repositories

2013-06-19 Thread Greg Von Kuster
Hello Joachim and Björn, This issue should be resolved in change set 10103:d842d50a6ed3, which is currently running on the test tool shed. Thanks fro reporting this! Greg Von Kuster On Jun 19, 2013, at 6:16 AM, Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de wrote: Hi Joachim,

Re: [galaxy-dev] Possible bug in dynamic options

2012-08-28 Thread Mutlu Dogruel
Thanks for the reply but no, I wasn't using any filters. The relevant XML sections are like this: code file=listFiles.py/ ... param name = url_paste label = Select a file to copy type=select multiple=false dynamic_options = listFiles()/ Mutlu On 24

Re: [galaxy-dev] Possible bug in dynamic options

2012-08-24 Thread John Chilton
I cannot speak to the code running twi, but are using a unique_value filter? The dynamic_options code use to completely lock up our galaxy server for minutes at a time before I applied this optimization:

Re: [galaxy-dev] Possible bug: Tags in a workflow gets duplicated hundreds of times

2012-03-27 Thread thondeboer
Thanks for addressing this...The workflows load MUCH faster now...ThonOn Mar 20, 2012, at 07:54 AM, Dannon Baker dannonba...@me.com wrote:Hi Thon, Thanks for reporting this. I see what the problem is here at least for the clone duplication, and I've committed a fix in 6833:e8e361707865 that will

Re: [galaxy-dev] Possible bug: Tags in a workflow gets duplicated hundreds of times

2012-03-20 Thread Dannon Baker
Hi Thon, Thanks for reporting this. I see what the problem is here at least for the clone duplication, and I've committed a fix in 6833:e8e361707865 that will affect all workflows going forward. Unfortunately, there isn't a complete solution for fixing the extra tags. The problem was that

[galaxy-dev] Possible bug: Tags in a workflow gets duplicated hundreds of times

2012-03-19 Thread Anthonius deBoer
Hi,I have run into an issue with a tag being duplicated hundreds of times each time I open, edit or clone a workflow.I have tried to manually remove them, but each time the tag gets inserted somehow and duplicated each time I edit the workflow.By now there are hundreds of copies of the tags at it

Re: [galaxy-dev] possible bug - user log in / browser cache

2011-03-07 Thread Nate Coraor
Ryan Golhar wrote: I have a local instance running. When I'm logged in as user1, log out, then try to log in as user2, I keep getting the You have been logged out message. Its as if the browser's cache is retaining some information. To get around this, after I log out as user1, I have to

Re: [galaxy-dev] possible bug - user log in / browser cache

2011-03-07 Thread Peter Cock
On Mon, Mar 7, 2011 at 5:56 PM, Nate Coraor n...@bx.psu.edu wrote: Ryan Golhar wrote: I have a local instance running.  When I'm logged in as user1, log out, then try to log in as user2, I keep getting the You have been logged out message. Its as if the browser's cache is retaining some

Re: [galaxy-dev] possible bug - user log in / browser cache

2011-03-07 Thread Nate Coraor
Peter Cock wrote: On Mon, Mar 7, 2011 at 5:56 PM, Nate Coraor n...@bx.psu.edu wrote: Ryan Golhar wrote: I have a local instance running.  When I'm logged in as user1, log out, then try to log in as user2, I keep getting the You have been logged out message. Its as if the browser's