Hi all
After updating to the last stable galaxy when I'm trying to upgrade the
database I'm getting the following message:
/steno-internal/projects/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/url.py:105:
SADeprecationWarning: The SQLAlchemy PostgreSQL
That worked perfectly! Thanks Nate!
Chris
Galaxy dev:
I'm installing a local galaxy instance (Dec 4, 2012 vintage) and it is
running well under mySQL, but I'm having trouble getting it to work with a
postgres database.
I've done the following to create the db and provide
Galaxy dev:
I'm installing a local galaxy instance (Dec 4, 2012 vintage) and it is running
well under mySQL, but I'm having trouble getting it to work with a postgres
database.
I've done the following to create the db and provide permissions:
$ whoami
galaxy
$ createdb galaxy_prod4
$ psql
Hi,
thanks for the answer. I have one more question. Is there one main
table (in the database), which creates one key for one job and this key
is allocated over other tables?
Thank you!
Best,
Christin
Am 08.03.2012 16:40, schrieb Björn Grüning:
Hi Christin,
I would like to clarify
Yes, see the table 'job'. You may or may not find this helpful, but here's a
big database schema from our wiki:
http://wiki.g2.bx.psu.edu/DataModel?action=AttachFiledo=viewtarget=galaxy_schema.png
-Dannon
On Mar 9, 2012, at 8:00 AM, christin weinberg wrote:
Hi,
thanks for the answer. I
Hi Christin,
I would like to clarify whether we have understood something about the
database correctly. Is is right that all calculations with galaxy are
stored as a link in the database. And the data are stored somewhereelse?
Yes, kind of :)
Is it possible to store the data only in the
Dear all,
due to some work on the user management of our servers we had to rename
the user galaxy runs as. Up to now we used ident as postgres
authentication method, meaning that here postgres expects unix username
galaxy to have permissions of galaxy postgres user.
The entry in
