Re: [galaxy-dev] rgWebLogo3 with Probabilities instead of Entropy

2011-07-06 Thread Ross
FYI: I patched the wrapper to offer all the weblogo Y axis scale
options and an additional test to central #5766 and some additional
dependency error reporting in #5772 - latest wrapper version is 0.4




On Fri, Jul 1, 2011 at 8:28 AM, Ross ross.laza...@gmail.com wrote:
 Thanks - code to accompany good suggestions is always appreciated :)

 I'll write a test and get a patched version on test as soon as I get
 some time - travelling all day today - will let you know when it's
 done

 On Fri, Jul 1, 2011 at 7:20 AM, Assaf Gordon gor...@cshl.edu wrote:
 Hello Ross and Galaxy team,

 May I suggest this small patch, that enables WebLogo to plot either Entropy 
 bits (the current default) or just nucleotides probabilities ?
 It uses the standard -U parameter of weblogo3.

 -gordon



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 --
 Ross Lazarus MBBS MPH;
 Associate Professor, Harvard Medical School;
 Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
 Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;




-- 
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School;
Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;

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Re: [galaxy-dev] rgWebLogo3 with Probabilities instead of Entropy

2011-06-30 Thread Ross
Thanks - code to accompany good suggestions is always appreciated :)

I'll write a test and get a patched version on test as soon as I get
some time - travelling all day today - will let you know when it's
done

On Fri, Jul 1, 2011 at 7:20 AM, Assaf Gordon gor...@cshl.edu wrote:
 Hello Ross and Galaxy team,

 May I suggest this small patch, that enables WebLogo to plot either Entropy 
 bits (the current default) or just nucleotides probabilities ?
 It uses the standard -U parameter of weblogo3.

 -gordon



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 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
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-- 
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School;
Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;

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Please keep all replies on the list by using reply all
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