Re: [galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Anne Pajon
I wrote a script to compare these files mainly to be able to remove tool's sections and add our own, but when used to compare main vs sample I've got 2 sections and 3 tools that are in main but not in sample. Here is the list: WARNING: --- cshl_library_information: Section from tool_conf.xml.mai

Re: [galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Anne Pajon
Got it. Thanks! On 27 Mar 2012, at 16:53, Greg Von Kuster wrote: > We have a buildbot set up that runs our functional tests against various > platforms / environments. The .sample file used by the buildbot tests > everything. The tool_conf.xml.main contains a subset of everything that is > t

Re: [galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Greg Von Kuster
We have a buildbot set up that runs our functional tests against various platforms / environments. The .sample file used by the buildbot tests everything. The tool_conf.xml.main contains a subset of everything that is tested. On Mar 27, 2012, at 11:48 AM, Anne Pajon wrote: > Hi Nate, > > Th

Re: [galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Anne Pajon
Hi Nate, Thanks but I am still confused... sorry. Why these two files are different then? Are you not running the functional tests on all the tools available at the public server? Anne. On 27 Mar 2012, at 16:33, Nate Coraor wrote: > On Mar 27, 2012, at 11:17 AM, Anne Pajon wrote: > >> Hi, >

Re: [galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Nate Coraor
On Mar 27, 2012, at 11:17 AM, Anne Pajon wrote: > Hi, > > I would like to know which tool_conf.xml to use, and would like to know the > difference between the main and the sample one. I know that the functional > tests are running against the tool_conf.xml.sample but what > tool_conf.xml.main

[galaxy-dev] tool_conf.xml.main vs tool_conf.xml.sample

2012-03-27 Thread Anne Pajon
Hi, I would like to know which tool_conf.xml to use, and would like to know the difference between the main and the sample one. I know that the functional tests are running against the tool_conf.xml.sample but what tool_conf.xml.main is used for? Thanks. Anne. -- Anne Pajon, Ph.D. Cancer Rese