Hi Karen,
that bug was fixed. Can you update your Galaxy installation?
Cheers,
Bjoern
> Hello,
>
>
> I am currently unable to install a number of tools from toolshed to
> our cloud instance. Unfortunately, this pops up for quite a few tools
> (I am currently trying to install cuffmerge, but I see this again and
> again). Any help would be appreciated!
>
>
> I am seeing the following error:
>
>
> URL:
> http://ec2-54-204-115-185.compute-1.amazonaws.com/admin_toolshed/prepare_for_install?tool_shed_url=http://testtoolshed.g2.bx.psu.edu/&repository_ids=1a0e2ec172f34c67&changeset_revisions=a29a35968ddb
> File
> '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/middleware/error.py',
> line 149 in __call__
> app_iter = self.application(environ, sr_checker)
> File
> '/mnt/galaxy/galaxy-app/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py',
> line 84 in __call__
> return self.application(environ, start_response)
> File
> '/mnt/galaxy/galaxy-app/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py',
> line 633 in __call__
> return self.application(environ, start_response)
> File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/base.py', line
> 132 in __call__
> return self.handle_request( environ, start_response )
> File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/base.py', line
> 190 in handle_request
> body = method( trans, **kwargs )
> File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/__init__.py',
> line 221 in decorator
> return func( self, trans, *args, **kwargs )
> File
> '/mnt/galaxy/galaxy-app/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
> line 896 in prepare_for_install
> common_install_util.get_dependencies_for_repository( trans,
> tool_shed_url, repo_info_dict, includes_tool_dependencies )
> File
> '/mnt/galaxy/galaxy-app/lib/tool_shed/util/common_install_util.py',
> line 84 in get_dependencies_for_repository
> installed_rd, missing_rd =
> get_installed_and_missing_repository_dependencies_for_new_install( trans,
> repo_info_tuple )
> File
> '/mnt/galaxy/galaxy-app/lib/tool_shed/util/common_install_util.py',
> line 190 in
> get_installed_and_missing_repository_dependencies_for_new_install
> tool_shed, name, owner, changeset_revision,
> prior_installation_required =
> suc.parse_repository_dependency_tuple( rd_tup )
> File '/mnt/galaxy/galaxy-app/lib/tool_shed/util/shed_util_common.py',
> line 1106 in parse_repository_dependency_tuple
> prior_installation_required = str( prior_installation_required )
> UnboundLocalError: local variable 'prior_installation_required'
> referenced before assignment
>
>
> --
> Karen H. Miga, PhD
>
> Postdoctoral Scholar
> University of California, Santa Cruz
> (831)459-5232
> ___
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