Hi Inbar
If you want to keep the NCBI stile fasta header, you need to change the
setting for Output Sequence File Format: to NCBI style FASTA (m).
By default, most EMBOSS tools change the fasta header format to the
EMBOSS style format.
Regards, Hans-Rudolf
On 06/16/2013 12:01 PM, Inbar Plaschke wrote:
Dear galaxy developers,
When I use the EMBOSS tool: trimest
https://main.g2.bx.psu.edu/tool_runner?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS%3A%20trimest102/5.0.0,Trim
poly-A tails off EST sequences , within galaxy
The sequences names in the fasta output file comes out without their
beginning, for instance:
*gi|259479195|dbj|*AB491800.1|Brachionusplicatilisstt3mRNAforoligosaccharytransferaseSTT3subunithomolog,partialcds
Will be shortened into:
AB491800.1|Brachionusplicatilisstt3mRNAforoligosaccharytransferaseSTT3subunithomolog,partialcds
How can I keep the beginning of the sequence names? Am I doing something
wrong?
Many thanks for your help
Inbar
Description: logo_50prcnt
Inbar Plaschkes
Bioinformatics Core Facility
National Institute for Biotechnology
Ben-Gurion University of the Negev
Beer-Sheva 84105, Israel
Building 51, room 323
Email: inba...@bgu.ac.il mailto:inba...@bgu.ac.il
Tel: +972-8-6428676
Fax: +972-8-6479035
Web: http://bioinfo.bgu.ac.il http://bioinfo.bgu.ac.il/
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