Aside: If I add steps to the beginning of the workfow, the step that
runs too early, typically occurs earlier in the flow. Can this indicate
a race condition where not all dependencies are available (stored?) yet
in the database at the time of querying for job eligible for queueing?
Best,
Geert,
This should be fixed in the up-to-date stable branch as far as I know. Can
you tell me what 'hg summary' states?
-Dannon
On Mon, May 20, 2013 at 4:43 PM, Geert Vandeweyer
geert.vandewey...@ua.ac.be wrote:
Hi,
After the latest upgrade (april), I'm having issues when starting
hg summary:
parent: 9320:47ddf167c9f1 tip
Use Galaxy's ErrorMiddleware since Paste's doesn't return
start_response. Fixes downloading tarballs from the Tool Shed when
use_debug = false.
branch: stable
commit: 18 modified, 178 unknown
update: (current)
Geert
On 05/21/2013 04:59 PM, Dannon
Ok, so you're running the old tip of -dist. There are a few new updates
you can retrieve using `hg pull -u -b stable
http://bitbucket.org/galaxy/galaxy-central`.
-Dannon
On Tue, May 21, 2013 at 12:01 PM, Geert Vandeweyer
geert.vandewey...@ua.ac.be wrote:
hg summary:
parent:
Hi Dannon,
I pulled the new updates and restarted galaxy. However, the issue is not
resolved. Is there other information you might need?
hg summary:
parent: 9332:0f51ae4f1c84 tip
Unicode fixes for workflow names in Tool Menu.
branch: stable
Best,
Geert
On 05/21/2013 06:08 PM, Dannon
Hi,
After the latest upgrade (april), I'm having issues when starting
(batch) workfows. Sometimes, it seems that step dependencies are not
stored correctly, leading to some steps being started too soon, without
prior datasets being completed. Specifically, for some workflows, some
of the
