Re: [galaxy-dev] [Patch] ToolShed support for included tools

2012-10-26 Thread Greg Von Kuster
Hello Franco, These details for defining tool dependency installation for tools contained in tool shed repositories are discussed in the Galaxy tool shed wiki at http://wiki.g2.bx.psu.edu/ToolShedToolFeatures. You can also learn a lot by looking at example tool_dependency.xml files in

Re: [galaxy-dev] [Patch] ToolShed support for included tools

2012-10-25 Thread Greg Von Kuster
Hi Bjorn, I've committed an slightly altered version of your contributed code for handling tool dependencies that are zip archives in change set 8107:b12140970208, which will be available in the next Galaxy release currently scheduled for the end of next week. Your code required Python 2.6+,

Re: [galaxy-dev] [Patch] ToolShed support for included tools

2012-10-17 Thread Greg Von Kuster
Hello Bjorn, From your comments, it seems you are looking for a way to define a tool dependency that is included in the contents of the repository when it is installed from the tool shed. If this is the case, then your tool_dependencies.xml tag set needs to be changed to the following.