Hi,
I updated the test and the tool shed accordingly to Dave suggestion.
I'm just wondering, the TS tests were passing with the old version,
anything I should worry about? :)
Thanks and sorry for the inconvenience!
Bjoern
Am 29.04.2014 16:07, schrieb Peter Cock:
On Tue, Apr 29, 2014 at
Hi Dave,
This problem persists (or has reoccured),
This tool dependency's required tool dependency samtools version
0.1.19 has status Error.
Did you discover anymore last week? Sorry for the lag in my reply, I busy
with other things.
Thanks,
Peter
On Mon, Apr 21, 2014 at 2:24 PM, Dave
Peter,
From what I've been able to determine, samtools' failure was due to an
error in the testing environment startup process, which in turn caused
errors in a number of tool dependency packages. I've fixed the initial
error, and the next test run should result in a successful samtools
Thanks Dave,
On a slight tangent, is there a way in the ToolShed to see what
other repositories use a given repository as a dependency?
e.g. From http://testtoolshed.g2.bx.psu.edu/view/iuc/package_samtools_0_1_19
it there any way to see what uses samtools 0.1.19?
Cheers,
Peter
On Mon, Apr 21,
The two options I normally use for that are the Repository dependency
definitions and Tool dependency definitions links under the Valid
Galaxy Utilities heading in the left panel, which provide an overview
of all dependencies of the relevant type.
--Dave B.
On Mon 21 Apr 2014 09:39:51 AM
