Re: [galaxy-dev] [galaxy-iuc] package_samtools_0_1_19 - bcftools and misc utilities

2013-09-17 Thread Bjoern Gruening
Hi JJ, I've had occasion to use some of the samtools misc utilities in galaxy tools. Should those also be copied to the $INSTALL_DIR/bin when package_samtools is installed? Sorry, I do not get the question :( Are you asking to enhance the existing samtools definition? Thanks, JJ

Re: [galaxy-dev] [galaxy-iuc] package_samtools_0_1_19 - bcftools and misc utilities

2013-09-17 Thread Jim Johnson
On 9/17/13 7:08 AM, Bjoern Gruening wrote: Hi JJ, I've had occasion to use some of the samtools misc utilities in galaxy tools. Should those also be copied to the $INSTALL_DIR/bin when package_samtools is installed? Sorry, I do not get the question :( Are you asking to enhance the existing

Re: [galaxy-dev] [galaxy-iuc] package_samtools_0_1_19 - bcftools and misc utilities

2013-09-17 Thread Bjoern Gruening
Hi, oh I see. Great! I would vote to include them in the main samtools package and extend the help text a little bit, so that the search will find it. If you like you can add it to: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies/package_samtools_0_1_19 I have

Re: [galaxy-dev] [galaxy-iuc] package_samtools_0_1_19 - bcftools and misc utilities

2013-09-17 Thread John Chilton
On Tue, Sep 17, 2013 at 7:43 AM, Bjoern Gruening bjoern.gruen...@gmail.com wrote: Hi, oh I see. Great! I would vote to include them in the main samtools package and extend the help text a little bit, so that the search will find it. Seconded, this would be helpful for some stuff I have been