Re: [galaxy-dev] [galaxy-user] Filename extension in new tool

2011-02-17 Thread Sean Davis
On Thu, Feb 17, 2011 at 5:48 AM, Peter Cock wrote: > On Thu, Feb 17, 2011 at 3:00 AM, Sean Davis wrote: > > I have a tool that takes a pdb file as input. The authors of the > *compiled* > > code require that the suffix be either ".pdb" or ".ent". When I upload a > > .pdb file, the filename that

Re: [galaxy-dev] [galaxy-user] Filename extension in new tool

2011-02-17 Thread Sean Davis
On Thu, Feb 17, 2011 at 8:07 AM, Peter Cock wrote: > On Thu, Feb 17, 2011 at 12:37 PM, Sean Davis wrote: > > > > On Thu, Feb 17, 2011 at 5:48 AM, Peter wrote: > >> > >> Once in Galaxy all the data files have the extension .dat on disk, so > >> I would try using a wrapper script that creates a symb

Re: [galaxy-dev] [galaxy-user] Filename extension in new tool

2011-02-17 Thread Peter Cock
On Thu, Feb 17, 2011 at 12:37 PM, Sean Davis wrote: > > On Thu, Feb 17, 2011 at 5:48 AM, Peter wrote: >> >> Once in Galaxy all the data files have the extension .dat on disk, so >> I would try using a wrapper script that creates a symbolic link from the >> input.dat file to something like input.pdb

Re: [galaxy-dev] [galaxy-user] Filename extension in new tool

2011-02-17 Thread Peter Cock
On Thu, Feb 17, 2011 at 3:00 AM, Sean Davis wrote: > I have a tool that takes a pdb file as input.  The authors of the *compiled* > code require that the suffix be either ".pdb" or ".ent".  When I upload a > .pdb file, the filename that gets fed to the tool now ends in .dat.  What is > the best wa