Re: [galaxy-dev] [galaxy-user] List of genomes

2013-06-03 Thread YBao
Hi All, Can some one tell me the parameters used in the Galaxy Mapping Illumina with Bowtie defined as the common settings? I was trying to replicate the results from Galaxy using my own desktop installation of Bowtie but they differ by a rather big margin. Thanks much, Yongde On Mon, Apr 29,

Re: [galaxy-dev] [galaxy-user] List of genomes

2013-04-29 Thread Jennifer Jackson
Hello Yongde, The list of genomes is gathered from many sources and is comprehensive to facilitate external display functionality (at UCSC - main and microbial-, Ensembl, Wormbase, etc.). When assigning a dataset in a standard format to one of these sources, those