Sending to galaxy-dev ...
On Thu, Oct 27, 2011 at 5:51 AM, Jim Robinson
jrobi...@broadinstitute.org wrote:
Hi Mike,
Someone from the Galaxy team can perhaps give some insight on
what went wrong, I can comment on the error message from IGV.
That error is thrown from Picard, in every case
Its possible the sorting problem was a specific version and now gives
an error. The incorrect index caused by bad sequence lengths is a
recurrent problem, but I do not know what tool produces such headers.
Perhaps someone who has experienced this can chime in.
I'm not a samtools expert
