Hi,
This is not a tool from our distribution. Please send questions about local
instances, core galaxy development, or your own tool development to the
galaxy-dev@lists.bx.psu.edu mailing list and *not* this galaxy-user mailing
list.
That said, if you could provide more information about what's going on here
(structure of getsitesnotoverlap_tf, etc) I might be able to give a few
pointers.
Thanks!
-Dannon
On Feb 15, 2012, at 3:28 AM, La Chi wrote:
> hi,
> will you please help me how can i fix this error'
> thanks
>
>
> Traceback (most recent call last):
> File "/galaxy-dist/tools/ova/getsitesnotoverlap_tf.py", line 60, in ?
> if __name__ == "__main__": __main__()
> File "/galaxy-dist/tools/ova/getsitesnotoverlap_tf.py", line 50, in __main__
> result_set = connection.execute( "select * from getsitesnotoverlap_tf ("
> + userid + "," + tfid + "," + bpover + "," + ch + "," + sf +")" )
> File
> "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalchemy/engine/base.py",
> line 824, in execute
> return Connection.executors[c](self, object, multiparams, params)
> File
> "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalchemy/engine/base.py",
> line 888, in _execute_text
> return self.__execute_context(context)
> File
> "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalchemy/engine/base.py",
> line 896, in __execute_context
> self._cursor_execute(context.cursor, context.statement,
> context.parameters[0], context=context)
> File
> "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalchemy/engine/base.py",
> line 950, in _cursor_execute
> self._handle_dbapi_exception(e, statement, parameters, cursor, context)
> File
> "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalchemy/engine/base.py",
> line 931, in _handle_dbapi_exception
> raise exc.DBAPIError.instance(statement, parameters, e,
> connection_invalidated=is_disconnect)
> sqlalchemy.exc.ProgrammingError: (ProgrammingError) column "chr1" does not
> exist
> LINE 1: select * from getsitesnotoverlap_tf (6,149,-1000,chr1,tf)
> ^
> 'select * from getsitesnotoverlap_tf (6,149,-1000,chr1,tf)' {}
>
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