Hello Somayyeh,
These data are from the same authors/release build. At Ensembl, the same
5 core chromosomes plus an additional 78 unplaced scaffolds are
available. The data authors decided not to include these scaffolds in
their publication at NCBI.
For a primary genome, I suggest that we use the core 5 chromosomes as
this is what was published externally to NCBI by the authors. Would this
also be your preference? Both options are possible. Many genomes have
unmapped scaffolds included in the Galaxy genome builds, however they
are usually published at NCBI if/when the genome is submitted there.
Thank you!
Jennifer
On 7/21/11 5:41 AM, Somayyeh Fahiminiya wrote:
Hi Jen,
Thanks for your email and sorry to be late .
Please look at :
wget
ftp://ftp.ensemblgenomes.org/pub/plants/current/fasta/brachypodium_distachyon/dna/Brachypodium_distachyon.Brachy1.0.dna.toplevel.fa.gz
I dont know if it is more recent or the same version as yours
Thanks again
somayyeh
On Mon, Jul 11, 2011 at 9:05 PM, Jennifer Jackson j...@bx.psu.edu
mailto:j...@bx.psu.edu wrote:
Hello,
To confirm: the correct source would be this project, only has
chromosomes 1-5, at NCBI? Or is there a preferred (more
complete/recent) source?
http://www.ncbi.nlm.nih.gov/__bioproject/32607
http://www.ncbi.nlm.nih.gov/bioproject/32607
Once we have the source confirmed, we can add this genome to our
to-add list,
Best,
Jen
Galaxy team
On 7/7/11 6:25 AM, Somayyeh Fahiminiya wrote:
Hello everyone,
Could you plz add the genome of *Brachypodium distachyon* to
the Galaxy.
Thanks in advance
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