Stefano,
Certain jobs have up to 72 hours of run time on the public Main Galaxy
server at https://main.g2.bx.psu.edu (usegalaxy.org). Other sites or
your own site may have other limits.
Jobs last different time lengths in general depending on processing
needs and the capabilities of the server/cluster nodes they are running
on. RNA-seq analysis tools can be quite compute intensive. If processing
runs over 72 hours, the job will fail and either the run
parameters/inputs will need to be modified to shorten the execution time
or a local/cloud instance with sufficient resources (or another public
instance) be used.
Hope this helps to explain,
Jen
Galaxy team
On 2/22/13 11:00 AM, stefano cardinale wrote:
Hello,
I am not sure whether this is a bug or a problem with the server, or if it is
just normal but I started a BWA mapping on some paired-end reads of a bacterium
genome two days ago late evening. The job appears in yellow as 'running' but is
it normal that is taking all these hours? I must say this is not the first time
it happens.
any advice?
thanks
stefano
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Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org
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