Hello Olivier,
The first place to start is to change the metadata for the history items
so that the filetype is .fastq. Do this by clicking on the pencil icon
for each dataset, change the filetype, and save. Or, rename the files
before transfer.
If there are still problems, double check the actual fastq file format
first - if the data are large (over 2G) consider using direct FTP to
reduce the chance of file corruption during transfer (instructions are
on the Upload form). Also please feel free to share a link to your
history containing the problem data and we can try to offer advice.
(Options -> Share or Publish). You can send the share link back directly
to me.
Apologies for the delay in reply,
Best,
Jen
Galaxy team
On 4/14/11 9:24 AM, Olivier Schaad wrote:
Dear Sir
I try to use Bowtie mapping in galaxy , I import my Illumina
s_1_sequence.txt , then I try to use the convert
my userName is my email
21: FASTQ Groomer on data 9
An error occurred running this job: /There was an error reading your
input file. Your input file is likely malformed.
It is suggested that you double-check your original input file for
errors -- helpful information for this purpose has been provided below.
However, if you think that you have/
but I do have for all the files an error
I upload the data using URL
http://home.adm.unige.ch/~prnfg/HowardRiezman/wt(RH%20448)%20s_1_sequence.txt
http://home.adm.unige.ch/~prnfg/HowardRiezman/9f-1B%20erg3%209f-10A-1B%20s_1_sequence.txt
http://home.adm.unige.ch/~prnfg/HowardRiezman/13f-9D%20erg3%2013f-9D-9D%20s_1_sequence.txt
http://home.adm.unige.ch/~prnfg/HowardRiezman/13f-13B%20erg3%2013f-9D-13B%20%20s_1_sequence.txt
http://home.adm.unige.ch/~prnfg/HowardRiezman/erg3%20RH%205702%20erg3%20s_1_sequence.txt
http://home.adm.unige.ch/~prnfg/HowardRiezman/9f-3A%20erg3%209f-10A-3A%20s_1_sequence.txt
Could you advice me ?
Best regards
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
