Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-06-12 Thread Ciara Ledero
Another question, Nate. After running Galaxy, I had problems with accessing
the data in the created upload folder. Is there anything else that I need
to do?

Thank you so much for all the help.
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Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-06-11 Thread Fields, Christopher J
On Jun 11, 2012, at 9:10 AM, Nate Coraor wrote:

 On Jun 10, 2012, at 8:56 PM, Ciara Ledero wrote:
 
 Hi all,
 
 So I was not able to configure Galaxy immediately after this post of mine 
 due to the tasks that I first needed to do. Looking back, I forgot to ask 
 this question:
 
 Do I need to perform the things stated in 
 http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP? I just have set 
 ftp_upload_dir to a created folder and ftp_upload_site to something other 
 than None.
 
 Hi Ciara,
 
 You only need to do this if you plan to allow users to upload files to their 
 histories via FTP (or another file transfer mechanism).  If you don't need 
 this functionality, you don't need to configure it.
 
 --nate


Nate, 

Were there plans to remove the 'FTP'-ness from this to indicate that any method 
for data transferal (sftp, scp, etc) works?

chris
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Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-06-11 Thread Nate Coraor

On Jun 11, 2012, at 3:45 PM, Fields, Christopher J wrote:

 On Jun 11, 2012, at 9:10 AM, Nate Coraor wrote:
 
 On Jun 10, 2012, at 8:56 PM, Ciara Ledero wrote:
 
 Hi all,
 
 So I was not able to configure Galaxy immediately after this post of mine 
 due to the tasks that I first needed to do. Looking back, I forgot to ask 
 this question:
 
 Do I need to perform the things stated in 
 http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP? I just have set 
 ftp_upload_dir to a created folder and ftp_upload_site to something other 
 than None.
 
 Hi Ciara,
 
 You only need to do this if you plan to allow users to upload files to their 
 histories via FTP (or another file transfer mechanism).  If you don't need 
 this functionality, you don't need to configure it.
 
 --nate
 
 
 Nate, 
 
 Were there plans to remove the 'FTP'-ness from this to indicate that any 
 method for data transferal (sftp, scp, etc) works?
 
 chris

Yes, that's the plan.

--nate
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Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-06-10 Thread Ciara Ledero
Hi all,

So I was not able to configure Galaxy immediately after this post of mine
due to the tasks that I first needed to do. Looking back, I forgot to ask
this question:

Do I need to perform the things stated in
http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP? I just have set
ftp_upload_dir to a created folder and ftp_upload_site to something other
than None.

Thanks in advance for the help!

Cheers.

CL
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Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-05-01 Thread Ciara Ledero
Thanks for the reply, Nate!

Cheers,

CL
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Re: [galaxy-dev] Configuring Galaxy for FTP upload

2012-04-30 Thread Nate Coraor
On Apr 23, 2012, at 10:31 PM, Ciara Ledero wrote:

 Hi all,
 
 According to Galaxy, uploading files larger than 2GB will surely fail. For 
 this reason, uploading via FTP is recommended. Unfortunately, I cannot 
 download/install an FTP server for Galaxy since I am working on a remote 
 server. I only have access to it via Xming. Is there anyway to allow FTP 
 upload, without using ProFTPd? Can I use Mozilla's fireFTP or Linux's own 
 FTP? (Actually, I tried to connect to Galaxy, but I was denied access.).
 
 Thank you in advance for any help.

Hi Ciara,

ProFTPd is not required.  If your Galaxy users already have a way to access the 
server directly, that access method is fine.  You simply need to create a 
top-level directory under which you create directories for each user.  Then, 
set the top level directory as the value of 'ftp_upload_dir' in the config 
file, and set 'ftp_upload_site' to something other than the default 'None'.

e.g.:

/scratch/galaxy/upload
/scratch/galaxy/upload/us...@example.org
/scratch/galaxy/upload/us...@example.org

ftp_upload_dir = /scratch/galaxy/upload
ftp_upload_site = server.example.org

--nate

 
 CL
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