Hi Peter, Thanks! The fix worked with the new Illumina format. Your help is much appreciated :)
Cheers, Liisa Liisa Koski Bioinformatics Programmer From: Peter Cock <p.j.a.c...@googlemail.com> To: Liisa Koski <liisa.ko...@dnalandmarks.ca> Cc: galaxy-dev <galaxy-...@bx.psu.edu> Date: 2011-12-12 03:47 Subject: Re: [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized On Friday, December 9, 2011, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Fri, Dec 9, 2011 at 5:05 PM, Liisa Koski <liisa.ko...@dnalandmarks.ca > wrote: >> >> Thanks Peter! That would be great! Let me know when you want me to test it :) >> Cheers, >> Liisa > > The revised code is here on bitbucket (on the branch "tools"), you'll > need fastq_paired_unpaired.py and fastq_paired_unpaired.xml v0.0.5: Try this (looks like I had the wrong link on Friday), sorry: https://bitbucket.org/peterjc/galaxy-central/src/a25f7920a1e5/tools/fastq Peter
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