This looks to be a guppy bug that has now been fixed ( http://sourceforge.net/p/guppy-pe/bugs/10/) so we'll update the egg from our end, thanks!
For now, you can either build your own guppy 0.1.9+ egg to fix it or disable use_memdump in your universe (to skip it completely). Unless you're actually using the memdump capabilities, I'd recommend having it off for performance reasons anyway. -Dannon On Mon, Aug 12, 2013 at 7:56 AM, Sarah Maman <sarah.ma...@toulouse.inra.fr>wrote: > Dear all, > > When I try to install last sources of Galaxy(% hg clone > https://bitbucket.org/galaxy/**galaxy-dist/<https://bitbucket.org/galaxy/galaxy-dist/>) > , I have this error : > > Error at initialization of module heapycTraceback (most recent call last): > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/** > galaxy/webapps/galaxy/**buildapp.py", line 35, in app_factory > app = UniverseApplication( global_conf = global_conf, **kwargs ) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/**galaxy/app.py", > line 157, in __init__ > self.memdump = memdump.Memdump() > File > "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/lib/**galaxy/util/memdump.py", > line 24, in __init__ > self.heapy = guppy.hpy() > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/__init__.py"**, line 35, > in hpy > return r.guppy.heapy.Use > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, > in __getattr__ > return self._share.getattr(self, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, > in getattr > d = self.getattr2(inter, cache, owner, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 202, > in getattr2 > x = self.getattr_package(inter, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 250, > in getattr_package > x = self.makeModule(x, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 310, > in makeModule > return Share(module, self, module.__name__, Clamp) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 176, > in __init__ > getattr(inter, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, > in __getattr__ > return self._share.getattr(self, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, > in getattr > d = self.getattr2(inter, cache, owner, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 204, > in getattr2 > x = self.getattr3(inter, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 272, > in getattr3 > pa = getattr(pa, at) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 44, > in __getattr__ > return self._share.getattr(self, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 187, > in getattr > d = self.getattr2(inter, cache, owner, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 202, > in getattr2 > x = self.getattr_package(inter, name) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/etc/Glue.py"**, line 239, > in getattr_package > x = __import__(self.makeName(name)**, globals(), locals()) > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/heapy/View.**py", line > 556, in <module> > prime_builtin_types() > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/heapy/View.**py", line > 539, in prime_builtin_types > import guppy.heapy.heapyc > File "/usr/local/bioinfo/src/**galaxy-dev/galaxy-dist/eggs/** > guppy-0.1.8-py2.7-linux-x86_**64-ucs2.egg/guppy/sets/__init_**_.py", line > 3, in <module> > from setsc import BitSet # base bitset type > ImportError: /usr/local/bioinfo/src/galaxy-**dev/galaxy-dist/eggs/guppy-0. > **1.8-py2.7-linux-x86_64-ucs2.**egg/guppy/sets/setsc.so: undefined > symbol: _PyLong_AsScaledDouble > > > > > Coul you please help me ? > > Thanks in advance, > Sarah > > -- > --*-- > Sarah Maman > INRA - LGC - SIGENAE > http://www.sigenae.org/ > Chemin de Borde-Rouge - Auzeville - BP 52627 > 31326 Castanet-Tolosan cedex - FRANCE > Tel: +33(0)5.61.28.57.08 > Fax: +33(0)5.61.28.57.53 --*-- > > ______________________________**_____________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/> >
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