Re: [galaxy-dev] Error on database_connection statement in universe_wsgi.ini file

2012-08-08 Thread Nate Coraor
On Aug 6, 2012, at 9:17 PM, Kenneth R. Auerbach wrote: > Hello, > > Galaxy runs fine 'out of the box' with the default universe_wsgi.ini > initialization file. But when I change the "database_connection" statement to > connect to my MySql database, I get the errors below. Can you please tell >

Re: [galaxy-dev] Error on database_connection statement in universe_wsgi.ini file

2012-08-08 Thread Hans-Rudolf Hotz
Hi Don't use the '>' and '<'. That was just a sign to signal where to insert what. Have you also looked at James' reply? Regards, Hans On 08/08/2012 01:51 AM, Kenneth Auerbach wrote: Hi, Now I'm using this database_connection in my universe_wsgi.ini file: database_connection = mysql://:@

Re: [galaxy-dev] Error on database_connection statement in universe_wsgi.ini file

2012-08-07 Thread Kenneth Auerbach
Hi, Now I'm using this database_connection in my universe_wsgi.ini file: database_connection = mysql://:@/?unix_socket=/var/run/mysqld/mysqld.sock and I still get this: - linuxmint galaxy-galaxy-dist-ec29ce8e27a1 # sh run.sh Traceback (most recent call last): File "./scripts

Re: [galaxy-dev] Error on database_connection statement in universe_wsgi.ini file

2012-08-07 Thread James Taylor
Quoting Kenneth Auerbach (2012-08-07 01:19:56) > Modification to universe_wsgi.ini file: > > #database_connection = > sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE > > database_connection = > mysql:///galaxy?unix_socket=/var/run/mysqld/mys

Re: [galaxy-dev] Error on database_connection statement in universe_wsgi.ini file

2012-08-07 Thread Hans-Rudolf Hotz
maybe you need to include username, password and host? database_connection = mysql://:@/?unix_socket=/var/run/mysqld/mysqld.sock Regards, Hans On 08/07/2012 03:19 AM, Kenneth Auerbach wrote: Hello, Galaxy runs fine 'out of the box' with the default universe_wsgi.ini initialization file. B