On Nov 25, 2011, at 8:23 AM, Toqa Manasrah wrote: > Hello everybody, > I am trying to run my tool Vispa but every time i try to i got this error > messages: > > An error occurred running this job: > /home/galaxy/galaxy-dist/tools/vispa/main.bash: line 13: ./parser_v.2.sh: No > such file or directory > /home/galaxy/galaxy-dist/tools/vispa/main.bash: line 16: ./vispa.bash: No > such file or directory > > although all these files are reside under the same directory and have the > permission 755.
Hi Tuqa, The working directory used to execute your job is not the directory in which the tool itself resides. Your main script should use something like `basename $0` to determine what directory it's in, and then use that directory to call other scripts in the same directory. --nate > > how can I solve the problem? > > Thanks and regards, > Tuqa. > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
